Where to find protein data and run basic Molecular Dynamics simulation
Monday, July 11, 2016 at 08:47
Some webtools requires an actual file to be uploaded for processing.
Download the structure file of the protein you want to study from the Protein Data Bank (PDB). I'm using the spider toxin here.
They provide many tools:
- 3D-DART
- AMBER
- CcpNmr Analysis
- CcpNmr FormatConverter
- CING
- CNS
- CS-ROSETTA
- CYANA
- FANDAS
- HADDOCK
- GROMACS
- MARS
- TALOS+
- UNIO
- XPLOR-NIH